[10617] in Perl-Users-Digest
Perl-Users Digest, Issue: 4209 Volume: 8
daemon@ATHENA.MIT.EDU (Perl-Users Digest)
Thu Nov 12 19:07:22 1998
Date: Thu, 12 Nov 98 16:01:27 -0800
From: Perl-Users Digest <Perl-Users-Request@ruby.OCE.ORST.EDU>
To: Perl-Users@ruby.OCE.ORST.EDU (Perl-Users Digest)
Perl-Users Digest Thu, 12 Nov 1998 Volume: 8 Number: 4209
Today's topics:
What's wrong with this perl program? -from a beginner <zzhang@bayou.uh.edu>
Re: Win32::Process -- Inheriting IO::Socket Handles (Tye McQueen)
Special: Digest Administrivia (Last modified: 12 Mar 98 (Perl-Users-Digest Admin)
----------------------------------------------------------------------
Date: Thu, 12 Nov 1998 17:31:28 -0600
From: Zhengdong Zhang <zzhang@bayou.uh.edu>
Subject: What's wrong with this perl program? -from a beginner
Message-Id: <364B6FD0.3756@bayou.uh.edu>
This is a multi-part message in MIME format.
--------------51C84D152DB0
Content-Type: text/plain; charset=us-ascii
Content-Transfer-Encoding: 7bit
I have a bunch of DNA sequences (negative.gb3, attached) from different
bacterium species and I used GDE program to align these sequences and
make a phylogenetic tree (nega_tree, the first input file, attached).
Now I try to write a perl program to rearrange the original sequence
order to be the same as the order of the bacterium species in the
phylogenetic tree. My program(sort.perl, attached, run in UNIX) can
create the intermediate files (nega_list and join_flat.gb) but the final
file (sort_flat.gb) is empty. Please help me to find the bug. thanks.
--------------51C84D152DB0
Content-Type: text/plain; charset=us-ascii; name="nega_tree"
Content-Transfer-Encoding: 7bit
Content-Disposition: inline; filename="nega_tree"
209 Populations
Neighbor-Joining/UPGMA method version 3.57c
UPGMA method
Negative branch lengths allowed
+-------A.XYLANU
+---188
! +-------V.SPINOS
!
! +E.COLI
! +-20
! +-33 +E.COLI2
! ! !
! ! +E.COLI3
! +-43
! ! ! +E.COLI4
! ! ! +-21
! +-68 +-39 +AEROBACT
! ! ! !
! ! ! +SALMONEL
! +-69 !
! ! ! +E.COLI5
! +-78 !
! ! ! +PROTEUS1
! ! !
! +-81 +ERWINIA
! ! !
! ! ! +YERSINIA
! +-87 +-40
! ! ! +SERRATIA
! +-126 !
! ! ! +-P.SHIGEL
! ! !
! ! +--P.VULGAR
! !
! +-145 +HYDROPHI_1
! ! ! +--4
! ! ! ! +HYDROPHI
! ! ! +-35
! ! ! ! ! +SALMONIC
! +-159 +-51 +-25
! ! ! ! +A._MEDIA
! ! ! !
! ! ! +AEROMONA
! ! !
! ! +----H.AEGYPT
! !
! ! +PHOTOBAC
! ! +--3
! ! +-24 +PHOSPHOR
! ! ! !
! ! +-53 +LEIOGNAT
! ! ! !
! ! +-79 +LOGEI
! ! ! !
! ! ! +FISCHERI
! ! !
! ! +-104 +V.AESTUA
! ! ! ! !
! ! ! ! +-83 +V.MEDITE
! ! ! ! ! ! +-23
! ! ! ! ! +-34 +V.TUBIAS
! ! ! +-97 !
! ! ! ! +PELAGIUS
! ! ! !
! ! ! +-V.ALGINB
! ! !
! ! ! +V.LT1
! ! ! !
! ! ! +-54 +V.PARAHA
! ! ! ! ! +-26
! ! ! ! ! ! +V.PATRI
! ! ! ! +-36
! ! ! ! ! +V.NATRIE
! ! ! +-71 +-18
! ! ! ! ! +V._ALGIN
! ! ! ! !
! +-164 +-114 ! ! +V._CARCH
! ! ! ! ! +-80 ! +-41
! ! ! ! ! ! ! +-42 +V.DIAZOT
! ! ! ! ! ! ! !
! ! ! ! ! ! ! +PROTEOLY
! ! ! ! ! +-89 !
! ! ! ! ! ! ! +V.nereis
! ! ! ! ! ! !
! ! ! ! ! ! ! +HARVEYI
! ! ! ! ! ! +-19
! ! ! ! ! ! +BENECKEA
! ! ! ! ! !
! ! ! ! ! ! +V.FLUVLS
! ! ! ! ! +-95 +-22
! ! ! ! ! ! ! ! ! +V.MIMICU
! ! ! +-120 ! ! ! +-32 +--6
! ! ! ! ! ! ! ! ! ! +V.NINI
! ! ! ! ! ! ! ! ! !
! ! ! ! ! ! ! ! +-66 +V.METSCH
! ! ! ! ! ! ! ! ! !
! ! ! ! ! +-111 ! ! ! +V.CHOLER
! ! ! ! ! ! +-86 +-59
! ! ! ! ! ! ! +V._VULNI
! +-169 ! ! ! ! !
! ! ! ! ! ! ! ! +V.GAZOGE
! ! ! ! +-128 ! ! +-37
! ! ! ! ! ! ! ! +V.CINCIN
! ! ! ! ! ! ! !
! ! ! ! ! ! ! +-V.CHOLRA
! ! ! ! ! ! !
! ! ! ! ! ! +--MARINE.S
! ! ! ! ! !
! ! ! ! +-148 ! +-V.HOLLIS
! ! ! ! ! ! ! +-113
! ! ! ! ! ! ! ! ! +-V.DAMSEL
! ! ! ! ! ! +-122 +-93
! ! ! ! ! ! ! +-V.ANGIUL
! ! ! +-151 ! !
! ! ! ! ! +--V.ORDALI
! ! ! ! !
! ! ! ! +---V.MARINU
! +-172 ! !
! ! ! ! ! +O.SYMBIO
! ! ! ! +----5
! ! ! ! +REGIA
! ! ! !
! ! ! ! +--PSYCHROE
! ! ! +-131
+-205 ! ! +--BNL-1
! ! ! !
! ! ! ! +ALT.COLW
! ! ! ! +--2
! ! ! ! ! +A.COLWEL
! ! ! ! +-38
! ! ! ! ! ! +SH.HANED
! ! ! ! ! +--1
! ! ! ! +-57 +S.HANEDA
! ! ! ! ! !
! ! ! ! ! ! +A.BENTHI
! ! ! +-132 +--7
! ! +-182 ! +BAROPHIL
! ! ! ! !
! ! ! ! +--A.PUTRIF
! ! ! !
! ! ! ! +Ps.Flour
! ! ! ! +-27
! ! ! ! +-98 +RFTIA.E7
! ! ! ! ! !
! ! ! ! +-110 +-P.DENITR
! ! ! ! ! !
! ! ! ! ! ! +-AZOTO.V
! ! ! ! ! +-92
! ! ! ! +-154 ! +PS.AERUG
! ! +-185 ! ! ! +-72
! ! ! ! ! ! ! +ALCALIGE
! ! ! ! ! +-157 !
! ! ! ! ! ! ! +----THMCROSP
! ! ! ! ! ! !
! ! ! ! ! ! ! +--T.NEAPOL
! ! ! ! +-161 +-133
! ! ! ! ! ! +Thitrx_J
! ! ! ! ! +-17
! ! ! ! ! +Thitrx_3
! ! +-191 ! !
! ! ! ! ! +----SOLEMYA
! ! ! ! !
! ! ! ! ! +RFTIA.G3
! ! ! ! +----28
! ! ! ! +RFTIAHSP
! ! ! !
! ! ! ! +-----ALTEROMO
! ! ! ! +-175
! ! ! ! ! +-----THMCROLK
! ! +-193 +-181
! ! ! ! ! +RIFTIA_A
! ! ! ! ! +--76
! ! ! ! +-153 +A.CALCOA
! ! ! ! !
! ! ! ! +----C.MAGSMB
! ! ! !
! ! ! ! +L.PNEUMO
! ! ! ! +-61
! ! ! ! ! ! +L.PNEUM2
! ! +-196 ! ! +-46
! ! ! ! +---142 +LEGIONLA
! ! ! ! !
! ! ! ! ! +-L.LONGBE
! ! ! ! +-108
! ! ! ! ! +L.BOZEMA
! ! ! ! +-47
! ! ! ! +L.DUMOFF
! ! ! !
! ! ! ! +-------PS.E266
! ! ! +-189
! ! ! ! +PS.MLTBR
! ! ! +-----60
! ! ! +PS.MALTO
! ! !
! ! ! +-----ECTO.HAL
! ! ! +-166
! ! ! ! ! +---HALOMONA
! ! ! ! +-144
! ! ! ! +---PS.BATHY
! ! ! !
! ! +-198 +-179 +M.AGILE
! ! ! ! ! ! +-73
! ! ! ! ! ! ! +My.albus
! ! ! ! ! ! !
! ! ! ! ! ! ! +M.RUBRA
! ! ! ! ! +--135 +-64
! ! ! ! ! ! ! +M.METHA
! ! ! ! +-180 ! +-102
! ! ! ! ! ! ! ! ! +M.TRICHO
! ! ! ! ! ! +-119 +-48
! ! ! ! ! ! ! +M.PARVU
! ! ! ! ! ! !
! ! ! ! ! ! +--M.CAP2
! ! ! ! ! !
! ! ! ! +-186 +------Vt.Begg.
! ! +-202 ! ! !
! ! ! ! ! ! ! +ECTO.VAC
! ! ! ! ! ! ! +-45
! ! ! ! ! ! ! ! +ECTO.MOB
! ! ! ! ! ! ! +-146
! ! ! ! ! ! ! ! ! +--PS.15668
! ! ! ! +-190 ! ! +-118
! ! ! ! ! +-171 +--RFTIA.SB
! ! ! ! ! !
! ! ! ! ! ! +----M.CAP1
! ! ! ! ! +-158
! ! ! ! ! +----THIO.M1
! ! ! ! !
! ! ! ! +-------BG.ALBA
! ! ! !
! ! ! ! +--C.MINUTI
! ! ! +------117
! ! ! +--CHROMATI
! ! !
! ! ! +V.NEOCIS
! ! ! +-82
! ! ! ! +PS.ACIDO
! ! ! !
! ! ! +-115 +Rc.Gelat
! ! ! ! ! +-52
! ! ! ! ! +-65 +ALCALIGE_1
! ! ! ! ! ! !
! ! ! +-124 +-84 +RHODOPSE
! +-204 ! ! !
! ! ! ! +-Vt.fili.
! ! ! !
! ! ! +--LEPTHRIX
! ! +-140
! ! ! ! +PS.CEPAC
! ! ! ! +-63
+------207 ! ! ! +-67 +P.CEPAC1
! ! ! +-152 ! ! !
! ! ! ! ! +-130 +P.CEPAC2
! ! ! ! ! !
! ! ! ! ! +--Ps.solan
! ! ! +-163 !
! ! ! ! ! +----Vt.ster.
! ! ! ! !
! ! ! +-167 ! +-A.FAECAL
! ! ! ! ! +-106
! ! ! ! ! +-A.DENITR
! ! ! +-170 !
! ! ! ! ! +-----T.INTRME
! ! ! ! !
! ! ! +-176 +-----A.SERPEN
! ! ! ! !
! ! ! ! ! +--C.VOILAC
! ! ! ! +-127
! ! ! ! +--Ps.Indig
! ! ! !
! ! ! ! +-M.METHYL
! ! +-195 +-90
! ! ! ! ! +My.clara
! ! ! +-155 +-31
! ! ! ! ! +Ml.gluc.
! ! ! +-187 !
! ! ! ! ! +----Mm.methy
! ! ! ! !
! ! +-194 +------CHIN13.2
! ! !
! ! ! +------T.THIOPA
! ! +-178
! ! ! +T.THIOOX
! ! +----56
! ! +T.FERROX
! !
! ! +----V.ADAPTA
! ! +-162
! ! +-174 +----ERY.LONG
! ! ! !
! ! +-197 +-----RHODOMIC
! ! ! !
! ! ! ! +-R.MOOZER
! ! ! +-----91
! ! ! +-R.PROWAZ
! ! !
! ! ! +-V.CYCLOS
! ! ! !
! ! ! ! +HYP.G10
! ! ! ! +--9
! ! ! ! +-16 +HYP.SP.
! ! ! +-116 ! !
! ! ! ! ! +-44 +H.IFAM
! ! ! ! ! ! !
! ! ! ! ! +-70 +HYP.SP12
! ! ! +-123 ! ! !
! ! ! ! ! +-103 +HY.NP160
! ! ! ! ! !
! ! ! +-129 ! +-A.CYCLOC
! ! ! ! ! !
! ! ! ! ! +--H.VULGAR
! ! ! +-134 !
! ! ! ! ! +--HYP.440
! ! ! ! !
! ! ! ! ! +-HYP.H1
! ! ! +-143 +-94
! ! ! ! ! ! +HYP.ZV
! ! ! ! ! +--8
! ! ! ! ! +H.VULGAR_1
! ! ! +-173 !
! ! ! ! ! +---A._TUMEF
! ! ! ! !
! ! ! ! ! +---S.HUMOSA
! ! ! ! +-150
! ! ! ! ! +T.ACIDOP
! ! ! ! +-55
! ! ! ! +A.CRYPTU
! ! ! !
! ! ! ! +B.VISCOS_1
! ! ! ! +-13
! ! ! ! ! +B.VISCOS
! ! ! ! +-137
! ! ! ! ! ! +P.STUTZE_1
! ! ! ! ! +-15
! ! ! ! ! +P.STUTZE
-208 ! ! +-183 !
! ! ! ! ! ! +R.VACUOL_1
! ! +--203 ! ! +-139 +-12
! ! ! ! ! ! ! ! ! +R.VACUOL
! ! ! ! ! ! ! ! +-99
! ! ! ! ! ! ! ! ! ! +M.AQUATI
! ! ! ! ! ! ! ! ! ! +-14
! ! ! ! ! ! ! ! ! +-75 +A.AQUATI
! ! ! ! ! ! ! +-107 !
! ! ! ! ! ! +-156 ! +T.NOVELL
! ! ! ! ! ! ! ! !
! ! ! ! ! ! ! ! ! +T.MUTANS_1
! ! ! ! ! ! ! ! +-11
! ! ! ! ! ! ! ! +T.MUTANS
! ! ! ! ! ! +-165 !
! ! ! ! ! ! ! ! ! +---S.STELLA
! ! ! ! ! ! ! ! +-141
! ! ! ! ! +-177 ! +---N.WINGO
! ! ! ! +-192 ! !
! ! ! ! ! ! ! +----RHO.PALU
! ! ! ! ! ! !
! ! ! ! ! ! +-----P.ENHYDR
! ! ! ! ! !
! ! ! ! ! ! +CAU.C12
! ! ! ! ! ! +-74
! ! ! ! ! ! +-96 +C.CRESC
! ! ! ! ! ! ! !
! ! ! ! ! ! ! +-CAU.C90
! ! ! ! ! ! !
! ! ! ! ! ! ! +CA.BC101
! ! ! ! ! ! +--138 +-29
! ! ! ! ! ! ! ! ! +CAU.C107
! ! ! ! ! ! ! ! +-85
! ! ! ! ! ! ! ! ! ! +CAU.BC22
! ! ! ! +-200 ! ! ! +-100 +-58
! ! ! ! ! ! ! ! ! ! ! +CAU.P105
! ! ! ! ! ! +-184 +-125 !
! ! ! ! ! ! ! ! +-CAU.C6
! ! ! ! ! ! ! !
! ! ! ! ! ! ! +--PS.DIMIN
! ! ! ! ! ! !
! ! ! ! ! ! ! +---HYP.OLIG
! +-206 ! ! ! +-149
! ! ! ! ! +---H.POLYMO
! ! ! ! !
! ! ! ! ! +M.ORGANO_1
! ! ! ! ! +-10
! ! ! ! ! ! +M.ORGANO
! ! ! ! ! +-101
! ! ! ! ! ! ! +P.AM1_M2
! ! +-201 +----147 +-30
! ! ! ! +M.EXTORQ
! ! ! !
! ! ! +---PRO.EXTO
! ! !
! ! ! +ACE.SP1
! ! ! +-49
! ! ! +------109 +ACE.SP2
! ! ! ! !
! ! ! ! +-AC.MB58_
! ! ! !
! ! ! ! +RH.SPHAE
! ! ! ! +-77
! ! ! ! ! ! +PAR.DEN1
! ! ! ! ! +-62
! ! ! ! +-105 +PAR.DEN2
! ! +-199 ! !
! ! ! ! ! +RHODOPS2
! ! ! +-112 +-50
! ! ! ! ! +RHO.SPHA
! ! ! ! !
! ! ! +-160 +-RHO.DENI
! ! ! ! !
! ! ! ! ! +--RSP.RUB
! ! ! ! +-121
! ! +--168 +--RHDOSP.1
! ! !
! ! ! +-RH.CAPSU
! ! ! +-88
! ! +-136 +-RHO.CAP2
! ! !
! ! +--RHO.CAPS
! !
! +--------------THRMS.AQ
!
+-----------------------Thiovul.
Between And Length
------- --- ------
208 207 0.12551
207 205 0.05935
205 188 0.08391
188 A.XYLANU 0.12620
188 V.SPINOS 0.12620
205 204 0.01826
204 202 0.00660
202 198 0.03594
198 196 0.00382
196 193 0.00804
193 191 0.00756
191 185 0.01521
185 182 0.00600
182 172 0.01297
172 169 0.00268
169 164 0.00707
164 159 0.00741
159 145 0.01843
145 126 0.01854
126 87 0.01976
87 81 0.00223
81 78 0.00088
78 69 0.00292
69 68 0.00019
68 43 0.00712
43 33 0.00216
33 20 0.00212
20 E.COLI 0.00420
20 E.COLI2 0.00420
33 E.COLI3 0.00632
43 39 0.00003
39 21 0.00425
21 E.COLI4 0.00420
21 AEROBACT 0.00420
39 SALMONEL 0.00845
68 E.COLI5 0.01560
69 PROTEUS1 0.01579
78 ERWINIA 0.01871
81 40 0.01114
40 YERSINIA 0.00845
40 SERRATIA 0.00845
87 P.SHIGEL 0.02182
126 P.VULGAR 0.04158
145 51 0.04976
51 35 0.00396
35 4 0.00640
4 HYDROPHI_1 0.00000
4 HYDROPHI 0.00000
35 25 0.00220
25 SALMONIC 0.00420
25 A._MEDIA 0.00420
51 AEROMONA 0.01036
159 H.AEGYPT 0.07855
164 151 0.01590
151 148 0.00568
148 128 0.02240
128 120 0.00340
120 114 0.00245
114 104 0.00556
104 79 0.01130
79 53 0.00793
53 24 0.00715
24 3 0.00420
3 PHOTOBAC 0.00000
3 PHOSPHOR 0.00000
24 LEIOGNAT 0.00420
53 LOGEI 0.01135
79 FISCHERI 0.01928
104 97 0.00317
97 83 0.00750
83 V.AESTUA 0.01990
83 34 0.01358
34 23 0.00212
23 V.MEDITE 0.00420
23 V.TUBIAS 0.00420
34 PELAGIUS 0.00632
97 V.ALGINB 0.02740
114 111 0.00118
111 95 0.00886
95 89 0.00329
89 80 0.00348
80 71 0.00292
71 54 0.00377
54 V.LT1 0.01264
54 36 0.00528
36 26 0.00316
26 V.PARAHA 0.00420
26 V.PATRI 0.00420
36 18 0.00321
18 V.NATRIE 0.00415
18 V._ALGIN 0.00415
71 42 0.00793
42 41 0.00003
41 V._CARCH 0.00845
41 V.DIAZOT 0.00845
42 PROTEOLY 0.00847
80 V.nereis 0.01933
89 19 0.01866
19 HARVEYI 0.00415
19 BENECKEA 0.00415
95 86 0.00440
86 66 0.00672
66 32 0.00934
32 22 0.00143
22 V.FLUVLS 0.00420
22 6 0.00420
6 V.MIMICU 0.00000
6 V.NINI 0.00000
32 V.METSCH 0.00563
66 59 0.00212
59 V.CHOLER 0.01285
59 V._VULNI 0.01285
86 37 0.01330
37 V.GAZOGE 0.00840
37 V.CINCIN 0.00840
111 V.CHOLRA 0.03495
120 MARINE.S 0.03858
128 122 0.00243
122 113 0.00413
113 V.HOLLIS 0.03542
113 93 0.00942
93 V.DAMSEL 0.02600
93 V.ANGIUL 0.02600
122 V.ORDALI 0.03955
148 V.MARINU 0.06438
151 5 0.07006
5 O.SYMBIO 0.00000
5 REGIA 0.00000
169 131 0.04824
131 PSYCHROE 0.04480
131 BNL-1 0.04480
172 132 0.05071
132 57 0.03220
57 38 0.00435
38 2 0.00845
2 ALT.COLW 0.00000
2 A.COLWEL 0.00000
38 1 0.00845
1 SH.HANED 0.00000
1 S.HANEDA 0.00000
57 7 0.01280
7 A.BENTHI 0.00000
7 BAROPHIL 0.00000
132 A.PUTRIF 0.04500
182 161 0.02615
161 157 0.00630
157 154 0.00281
154 110 0.03878
110 98 0.00627
98 27 0.02418
27 Ps.Flour 0.00420
27 RFTIA.E7 0.00420
98 P.DENITR 0.02838
110 92 0.00867
92 AZOTO.V 0.02598
92 72 0.00883
72 PS.AERUG 0.01715
72 ALCALIGE 0.01715
154 THMCROSP 0.07343
157 133 0.03094
133 T.NEAPOL 0.04530
133 17 0.04530
17 Thitrx_J 0.00000
17 Thitrx_3 0.00000
161 SOLEMYA 0.08253
185 28 0.11049
28 RFTIA.G3 0.00420
28 RFTIAHSP 0.00420
191 181 0.02173
181 175 0.00962
175 ALTEROMO 0.09855
175 THMCROLK 0.09855
181 153 0.03502
153 76 0.05510
76 RIFTIA_A 0.01805
76 A.CALCOA 0.01805
153 C.MAGSMB 0.07315
193 142 0.08056
142 61 0.04392
61 L.PNEUMO 0.01298
61 46 0.00443
46 L.PNEUM2 0.00855
46 LEGIONLA 0.00855
142 108 0.02349
108 L.LONGBE 0.03340
108 47 0.02480
47 L.BOZEMA 0.00860
47 L.DUMOFF 0.00860
196 189 0.01752
189 PS.E266 0.12798
189 60 0.11513
60 PS.MLTBR 0.01285
60 PS.MALTO 0.01285
198 190 0.01974
190 186 0.01399
186 180 0.00794
180 179 0.00183
179 166 0.01635
166 ECTO.HAL 0.08947
166 144 0.02952
144 HALOMONA 0.05995
144 PS.BATHY 0.05995
179 135 0.05820
135 73 0.02993
73 M.AGILE 0.01770
73 My.albus 0.01770
135 119 0.00910
119 102 0.00880
102 64 0.01622
64 M.RUBRA 0.01350
64 M.METHA 0.01350
102 48 0.02097
48 M.TRICHO 0.00875
48 M.PARVU 0.00875
119 M.CAP2 0.03853
180 Vt.Begg. 0.10766
186 171 0.02160
171 146 0.03152
146 45 0.05393
45 ECTO.VAC 0.00855
45 ECTO.MOB 0.00855
146 118 0.02438
118 PS.15668 0.03810
118 RFTIA.SB 0.03810
171 158 0.01734
158 M.CAP1 0.07665
158 THIO.M1 0.07665
190 BG.ALBA 0.12958
202 117 0.14836
117 C.MINUTI 0.03690
117 CHROMATI 0.03690
204 195 0.04654
195 176 0.04373
176 170 0.00809
170 167 0.00218
167 163 0.00604
163 152 0.01329
152 140 0.01598
140 124 0.01540
124 115 0.00417
115 82 0.01673
82 V.NEOCIS 0.01970
82 PS.ACIDO 0.01970
115 84 0.01560
84 65 0.00606
65 52 0.00353
52 Rc.Gelat 0.01125
52 ALCALIGE_1 0.01125
65 RHODOPSE 0.01477
84 Vt.fili. 0.02083
124 LEPTHRIX 0.04060
140 130 0.01150
130 67 0.02900
67 63 0.00240
63 PS.CEPAC 0.01310
63 P.CEPAC1 0.01310
67 P.CEPAC2 0.01550
130 Ps.solan 0.04450
152 Vt.ster. 0.07198
163 106 0.05322
106 A.FAECAL 0.03205
106 A.DENITR 0.03205
167 T.INTRME 0.09131
170 A.SERPEN 0.09349
176 127 0.05973
127 C.VOILAC 0.04185
127 Ps.Indig 0.04185
195 194 0.00660
194 187 0.01953
187 155 0.04519
155 90 0.04922
90 M.METHYL 0.02477
90 31 0.02042
31 My.clara 0.00435
31 Ml.gluc. 0.00435
155 Mm.methy 0.07400
187 CHIN13.2 0.11919
194 178 0.03436
178 T.THIOPA 0.10435
178 56 0.09170
56 T.THIOOX 0.01265
56 T.FERROX 0.01265
207 206 0.02758
206 203 0.05557
203 197 0.03918
197 174 0.04958
174 162 0.01385
162 V.ADAPTA 0.08370
162 ERY.LONG 0.08370
174 RHODOMIC 0.09755
197 91 0.12123
91 R.MOOZER 0.02590
91 R.PROWAZ 0.02590
203 201 0.01725
201 200 0.00742
200 192 0.03124
192 183 0.01698
183 173 0.01594
173 143 0.03880
143 134 0.01223
134 129 0.00270
129 123 0.00377
123 116 0.00348
116 V.CYCLOS 0.03651
116 103 0.00639
103 70 0.01396
70 44 0.00763
44 16 0.00853
16 9 0.00000
9 HYP.G10 0.00000
9 HYP.SP. 0.00000
16 H.IFAM 0.00000
44 HYP.SP12 0.00853
70 HY.NP160 0.01616
103 A.CYCLOC 0.03012
123 H.VULGAR 0.03999
129 HYP.440 0.04376
134 94 0.02041
94 HYP.H1 0.02605
94 8 0.02605
8 HYP.ZV 0.00000
8 H.VULGAR_1 0.00000
143 A._TUMEF 0.05869
173 150 0.02899
150 S.HUMOSA 0.06850
150 55 0.05585
55 T.ACIDOP 0.01265
55 A.CRYPTU 0.01265
183 177 0.01063
177 165 0.01654
165 156 0.01188
156 139 0.01995
139 137 0.00417
137 13 0.05025
13 B.VISCOS_1 0.00000
13 B.VISCOS 0.00000
137 15 0.05025
15 P.STUTZE_1 0.00000
15 P.STUTZE 0.00000
139 107 0.02113
107 99 0.00481
99 12 0.02848
12 R.VACUOL_1 0.00000
12 R.VACUOL 0.00000
99 75 0.01073
75 14 0.01775
14 M.AQUATI 0.00000
14 A.AQUATI 0.00000
75 T.NOVELL 0.01775
107 11 0.03329
11 T.MUTANS_1 0.00000
11 T.MUTANS 0.00000
156 141 0.01807
141 S.STELLA 0.05630
141 N.WINGO 0.05630
165 RHO.PALU 0.08625
177 P.ENHYDR 0.10280
192 184 0.01639
184 138 0.06212
138 96 0.02551
96 74 0.00863
74 CAU.C12 0.01775
74 C.CRESC 0.01775
96 CAU.C90 0.02638
138 125 0.01062
125 100 0.01274
100 85 0.00696
85 29 0.01731
29 CA.BC101 0.00425
29 CAU.C107 0.00425
85 58 0.00876
58 CAU.BC22 0.01280
58 CAU.P105 0.01280
100 CAU.C6 0.02853
125 PS.DIMIN 0.04127
184 149 0.04831
149 HYP.OLIG 0.06570
149 H.POLYMO 0.06570
200 147 0.09864
147 101 0.03341
101 10 0.02960
10 M.ORGANO_1 0.00000
10 M.ORGANO 0.00000
101 30 0.02530
30 P.AM1_M2 0.00430
30 M.EXTORQ 0.00430
147 PRO.EXTO 0.06301
201 199 0.01185
199 109 0.12331
109 49 0.02505
49 ACE.SP1 0.00885
49 ACE.SP2 0.00885
109 AC.MB58_ 0.03390
199 168 0.06572
168 160 0.00967
160 112 0.04665
112 105 0.00427
105 77 0.01242
77 RH.SPHAE 0.01847
77 62 0.00542
62 PAR.DEN1 0.01305
62 PAR.DEN2 0.01305
105 50 0.02200
50 RHODOPS2 0.00890
50 RHO.SPHA 0.00890
112 RHO.DENI 0.03517
160 121 0.04252
121 RSP.RUB 0.03930
121 RHDOSP.1 0.03930
168 136 0.04139
136 88 0.02735
88 RH.CAPSU 0.02275
88 RHO.CAP2 0.02275
136 RHO.CAPS 0.05010
206 THRMS.AQ 0.24188
208 Thiovul. 0.39497
--------------51C84D152DB0
Content-Type: text/plain; charset=us-ascii; name="negative.gb3"
Content-Transfer-Encoding: 7bit
Content-Disposition: inline; filename="negative.gb3"
#A.XYLANU(5)
CUUCGUGAC-AAUAGCGAAGAG--GUCACAC-CUGU--UCCCAUACCGAACACAGAA-----GUCAAGCUCUUCAGCG-CCG-AUGGU-AGUUGGGGG-UUUU-CCCCCUGCGAG-AG-UAGGACGUCGCUAAG
#E.COLI(3)
UGCCUGGCGGC-AGUAGCGCGGUG--GUCCCAC-CUGA--CCCCAUGCCGAACUCAGAA-
----GUGAAACGCCGUAGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGCGAG-AG
-UAGGGAACUGCCAGGCAU
#E.COLI2(3)
UGCCUGGCGGC-CGUAGCGCGGUG--GUCCCAC-CUGA--CCCCAUGCCGAACUCAGAA-
----GUGAAACGCCGUAGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGCGAG-AG
-UAGGGAACUGCCAGGCAU
#E.COLI3(3)
UGCCUGGCGGC-CGUAGCGCGGUG--GUCCCAC-CUGA--CCCCAUGCCGAACUCAGAA-
----GUGAAACGCCGUAGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCUCAUGCGAG-AG
-UAGGGAACUGCCAGGCAU
#E.COLI4(3)
UGCCUGGCGGC-CUUAGCGCGGUG--GUCCCAC-CUGA--CCCCAUGCCGAACUCAGAA-
----GUGAAACGCCGUAGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGCGAG-AG
-UAGGGAACUGCCAGGCAU
#E.COLI5(3)
UGUCUGGCGGC-CAUAGCGCGGUG--GUCCCAC-CUGA--CCCCAUGCCGAACUCAGAA-
----GUGAAACGCCGUAGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGCGAG-AG
-UAGGGAACUGCCAGACAU
#ALT.COLW(3)
UGUCUGGAAAC-CAUAGCAUUGUG--GCACCAC-CUGA--UCCCAUCCCGAACUCAGAA-
----GUGAAACGCAAUUGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGUGAG-AG
-UAGGUCAUUUCCAGGCGC
#SH.HANED(3)
UGUCUGGAAAC-CAUAGCAUUGUG--GCCCCAC-CUGA--UCCCAUCCCGAACUCAGAA-
----GUGAAACGCAAUCGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGUGAG-AG
-UAGGUCAUUUCCAGGCGC
#ERWINIA(3)
UGCCUGGCGGU-GAUAGCGCGGUG--GUCCCAC-CUGA--CCCCAUGCCGAACUCAGAA-
----GUGAAACGCCGUAGCG-CCG-AUGGU-AGUGUGGGG--CCU-CCCCAUGCGAG-AG
-UAGGGAACUGCCAGGCAU
#SALMONEL(3)
UGCCUGGCGGC-ACUAGCGCGGUG--GUCCCAC-CUGA--CCCCAUGCCGAACUCAGAA-
----GUGAAACGCCGUAGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGCGAG-AG
-UAGGGAACUGCCAGGCAU
#AEROBACT(3)
UGCCUGGCGGC-UUUAGCGCGGUG--GUCCCAC-CUGA--CCCCAUGCCGAACUCAGAA-
----GUGAAACGCCGUAGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGCGAG-AG
-UAGGGAACUGCCAGGCAU
#YERSINIA(3)
UGCCUGGCGGC-CAUAGCGCGGUG--GUCCCAC-CUGA--UCCCAUGCCGAACUCAGAA-
----GUGAAACGCCGUAGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGCGAG-AG
-UAGGACACUGCCAGGCAU
#SERRATIA(3)
UGCCUGGCGGC-AAUAGCGCGGUG--GUCCCAC-CUGA--CCCCAUGCCGAACUCAGAA-
----GUGAAACGCCGUAGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGCGAG-AG
-UAGGACACUGCCAGGCAU
%PROTEUS1(3)
UGCUUGGCGGC-CAUAGCGCGGUG--GUCCCAC-CUGA--CCCCAUGCCGAACUCAGAA-
----GUGAAACGCCGUAGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGCGAG-AG
-UAGGGAACUGCCAAGCAU..
#P.VULGAR(3)
UGUCUGGCGGC-CAUAGCGCAGUG--GUCCCAC-CUGA--UCCCAUGCCGAACUCAGAA-
----GUGAAACGUUGUAGCG-CCG-AUGAU-GGUGUGGGG--UCU-CCCCAUGUGAG-AG
-UAGGGAACUGCCAGGCAU
#PHOTOBAC(3)
UGCUUGGCGAC-CAUAGCGUUAUG--GACCCAC-CUGA--UCCCUUGCCGAACUCAGUA-
----GUGAAACGUAAUAGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGUGAG-AG
-UAGGACAUCGCCAGGCAU
#V.ADAPTA(2)
UUGCUUGGUGGC-UAUAGCGUCUGU--GACCCAC-CCGA--UCCCAUCUCGAACUCGGCC
-----GUGAAACCGGACUGCG-CCG-AUGGU-ACUAGUGCU--UCA-AGCACUGGAAG-A
G-UAGGUCGUCGCCAGGCAU
#V.CYCLOS(3)
GACCUGGUGGU-UAUGGCGGAGCG--GCUGCAC-CCGA--UCCCAUUCCGAACUCGGCC-
----GUGAAACGCUCCAGCG-CUG-AUGGU-ACUUCGUC---UCA-AGACGCGGGAG-AG
-UAGGUCGCUGCCAGGUCU
#V.HOLLIS(2)
UUGCUUGGCGAC-CAUAGCGCUUUG--GACCCAC-CUGA--UUCCAUGCCGAACUCAGAA
-----GUGAAACAGAGCAGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGUGAG-A
G-UAGGACAUCGCCAGGCUU
#V.NEOCIS(4)
GCCUGAUGAC-CAUAGCGAUUUG--GUACCAC-UCCU--UCCCAUCCCGAACAGGACA--
---GUGAAACGAAUUUGCG-CCG-AUGAU-AGUGCGGGU--UCC----CGUGUGAA-AG-
UAGGUCAUCGUCAGGCU
#V.LT1(3)
UGCCUGGCGAC-CAUAGCGUUUUG--GACCCAC-CUGA-CCUCCAUUCCGAACUCAGAA-
----GUGAAACGAAAUAGCG-CCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGGACAUCGCUAGGCAU
#V.AESTUA(3)
UGCUUGGCGAC-CAUAGUGUUGUG--GACCCAC-CUGA--CUCUAUGCCGAACUCAGAA-
----GUGAAACGUAAUAGCG-CCG-AUGGU-AGUGUGGGG--CUU-CCCCAUGUGAG-AG
-UAGGACAUCGCCAGGCAU
#V.PARAHA(3)
UGCCUGGCGAC-CAUAGUGUUUUG--GACCCAC-CUGA--UUCCAUUCCGAACUCAGAA-
----GUGAAACGAAAUAGCG-CCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGGACAUCGCCAGGCAU
#V.NATRIE(3)
UGCCUGGCGAC-CAUAGCGUUUUG--GACCCAC-CUGA-CUUCCAUGCCGAACUCAGAA-
----GUGAAACGAAAUAGCG-CCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGGACAUCGCCAGGCAU
#V.nereis(3)
UGCCUGGCGAC-CAUAGCGCUUUG--GACCCAC-CUGA-UUUCCAUGCCGAACUCAGAA-
----GUGAAACGAAGUAGCG-CCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGGUCAUCGCCAGGCAU
#V.FLUVLS(3)
UGCCUGGCGAC-CAUAGUGUUUUG--GACCCAC-CUGA--UUCCAUUCCGAACUCAGAA-
----GUGAAACGAAACAGCG-UCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGAACAUCGCCAGGCAU
#V.MIMICU(3)
UGCCUGGCGAC-CAUAGCGUUUUG--GACCCAC-CUGA--UUCCAUUCCGAACUCAGAA-
----GUGAAACGAAACAGCG-UCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGAACAUCGCCAGGCAU
#V.CHOLER(3)
UGCCUGGCGAC-CAUAGCGUUUUG--GAUCCAC-CUGA--CUCCAUUCCGAACUCAGAA-
----GUGAAACGAAAUAGCG-UCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGAACAUCGCCAGGCA
#V.CHOLRA(3)
CGCCUGGCGAC-CAUAGCGUUUUG--GAUCCAC-CUGA--CUCUAU-CCGAACUCAGAA-
----GUGAAACGAAAUAGCG-UCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGAACAUCGCCAGGCC
#V._VULNI(3)
UGCCUGGCGAC-CAUAGCGUUUUG--GACCCAC-CUGA--ACCCAUUCCGAACUCAGAA-
----GUGAAACGAAAUAGCG-UCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGAACAUCGCCAGGCAU
#V._ALGIN(3)
UGCCUGGCGAC-CAUAGCGUUUUG--GACCCAC-CUGA-UUUCCAUGCCGAACUCAGAA-
----GUGAAACGAAAUAGCG-CCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGGACAUCGCCAGGCAU
#V.ALGINB(4)
GUUUGGCGAU-UAUAGCGUUUUG--GACCCAC-CUGA-UUUCCAUGCCGAACUCAGAA--
---GUGAAACGAAAUAGCG-CCG-AUGGU-AGUGUGGGG--CUU-CCCCAUGUGAG-AG-
UAGGACAUCGCCAGGCAU
#H.AEGYPT(5)
UCUGGCGGC-GAUAGUGCGGUG--GACCCAC-CUGA--GACCAUACCGAACUCAGAA---
--GUGAAACGCUGUAAUG-CCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG-U
AGGGCACCGCCAGGU
#V._CARCH(3)
UGCCUGGCGAC-CAUAGCGAUUUG--GACCCAC-CUGA--UUCCAUUCCGAACUCAGAA-
----GUGAAACGAAUUAGCG-CCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGGACAUCGCCAGGCAU
#V.DIAZOT(3)
UGCCUGGCGAC-CAUAGCGAUUUG--GACCCAC-CUGA--UUCCAUGCCGAACUCAGAA-
----GUGAAACGAAUUAGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGUGAG-AG
-UAGGACAUCGCCAGGCAU
#S.HANEDA(3)
UGUCUGGAAAC-CAUAGCAUUGUG--GCCCCAC-CUGA--UCCCAUCCCGAACUCAGAA-
----GUGAAACGCAAUCGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGUGAG-AG
-UAGGUCAUUUCCAGGCGC
#A.COLWEL(3)
UGUCUGGAAAC-CAUAGCAUUGUG--GCACCAC-CUGA--UCCCAUCCCGAACUCAGAA-
----GUGAAACGCAAUUGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGUGAG-AG
-UAGGUCAUUUCCAGGCGC
#V.MEDITE(3)
UGCUUGGCGAC-CAUAGCGUUGUG--GACCCAC-CUGA--UUCCAUGCCGAACUCAGAA-
----GUGAAACGCAAUAGCG-CCG-AUGGU-AGUGUGGGG--CUU-CCCCAUGUGAG-AG
-UAGGACAUCGCCAGGCUU
#HYDROPHI(3)
UGCCUGGCGGC-CAUAGCGCCGUG--GAACCAC-CUGA--UCCCAUGCCGAACUCAGAA-
----GUGAAACGCGGUAGCG-CCG-AUGGU-AGUGUGGCA--UUU--GCCAUGCGAG-AG
-UAGGACACUGCCAGGCA
#HARVEYI(3)
UGCUUGGCGAC-CAUAGCGAUUUG--GACCCAC-CUGAUCUUCCAUUCCGAACUCAGAA-
----GUGAAACGAAUUAGCG-CCG-AUGGU-AGUGUGGGG--CUU-CCCCAUGUGAG-AG
-UAGGACAUCGCCAGGCAU
#BENECKEA(3)
UGCUUGGCGAC-CAUAGCGAUUUG--GACCCAC-CUGA-CUUCCAUUCCGAACUCAGAA-
----GUGAAACGAAUUAGCG-CCG-AUGGU-AGUGUGGGG--CUU-CCCCAUGUGAG-AG
-UAGGACAUCGCCAGGCUU
#V.GAZOGE(3)
UGCCUGGCGAC-CAUAGCGUUUUG--GACCCAC-CUGA--UUCCAUGCCGAACUCAGUA-
----GUGAAACGAAACAGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGUGAG-AG
-UAGGACAUCGCCAGGCAU
#V.METSCH(3)
UGCCUGGCGAC-CAUAGCGUUUUG--GACCCAC-CUGA--UUCCAUGCCGAACUCAGAA-
----GUGAAACGAAACAGCG-UCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGAACAUCGCCAGGCAU
%PROTEOLY(3)
UGCCUGGCGAC-CAUAGCGAUUUG--GACCCAC-CUGA--UUCCAUGCCGAACUCAGUA-
----GUGAAACGAAUUAGCG-CCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGGACAUCGCCAGGCAU..
#V.CINCIN(3)
UGCCUGGCGAC-CAUAGCGUUUUG--GACCCAC-CUGA--UUCCAUGCCGAACUCAGUA-
----GUGAAACGAAACAGCG-UCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGUGAG-AG
-UAGAACAUCGCCAGGCAU
#V.MARINU(3)
UGUUUGGUGAC-CAUAGUGUUGUG--GUACCAC-CUGA--CUCCAUUCCGAACUCAGUA-
----GUGAAACGUAAUAACG-CCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGG-UAUCGCCAGGCA
#A.PUTRIF(3)
UGUCUGGUGAU-AAUAGCAUUGUG--GAACCAC-CUGA--UCCCAUCCCGAACUCAGAA-
----GUGAAACGCAAUUGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGUGAG-AG
-UAGGUCAUUGCCAGGCAU
#A.BENTHI(2)
AAGUCUGGAAAC-CAUAGCAUUGUG--GCCCCAC-CUGA--UCCCAUCUCGAACUCAGAA
-----GUGAAACGCAAUCGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGUGAG-A
G-UAGGUCAUUUCCAGGCGC
#PELAGIUS(3)
UGCUUGGCGAC-CAUAGCGUUGUG--GACCCAC-CUGA--UUCCAUGCCGAACUCAGAA-
----GUGAAACGCAAUAGCG-CCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGGACAUCGCCAGGCAU
#V.DAMSEL(3)
UGCCUGGCGAC-CAUAGCGUUGUG--GUCCCAC-CUGA--AUCCAUGCCGAACUCAGAA-
----GUGAAACGCAGCAGCG-UCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGUGAG-AG
-UAGGACAUCGCCAGGCAU
#V.ANGIUL(3)
UGCCUGGCGAC-CAUAGUGUUGUG--GACCCAC-CUGA--UUCCAUGCCGAACUCAGAA-
----GUGAAACACAACAGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGUGAG-AG
-UAGGACAUCGCCAGGCAU
#V.ORDALI(3)
UGCUUGGUGAU-CAUAGCGUUGUG--GACCCAC-CUGA--CUCCAUGCCGAACUCAGAA-
----GUGAAACACAACAGCG-CCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGGACAUCGCUAGGCAU
#V.TUBIAS(3)
UGCUUGGCGAC-CAUAGCGUUGUG--GACCCAC-CUGA--UUCCAUGCCGAACUCAGAA-
----GUGAAACGCAAUAGCG-CCG-AUGGU-AGUGUGGGG--CUU-CCCCAUGUGAG-AG
-UAGGACAUCGCCAGGCAU
#FISCHERI(3)
UGCCUGGCGAC-CAUAGCAUUAUG--GACCCAC-CUGA--UCCCAUGCCGAACUCAGAA-
----GUGAAACGUAAUAGCG-CCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGGACAUCGCCAGGCAU
#LOGEI(3)
UGCUUGGCGAC-CAUAGCGUUAUG--GACCCAC-CUGA--UUCCAUGCCGAACUCAGAA-
----GUGAAACGUAAUAGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGUGAG-AG
-UAGGACAUCGCCAGGCAU
#LEIOGNAT(3)
UGCUUGGCGAC-CAUAGCGUUAUG--GACCCAC-CUGA--UCCCAUGCCGAACUCAGUA-
----GUGAAACGUAAUAGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGUGAG-AG
-UAGGACAUCGCCAGGCAU
#PHOSPHOR(3)
UGCUUGGCGAC-CAUAGCGUUAUG--GACCCAC-CUGA--UCCCUUGCCGAACUCAGUA-
----GUGAAACGUAAUAGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGUGAG-AG
-UAGGACAUCGCCAGGCAU
#SALMONIC(3)
UGCCUGGCGGC-CAUAGCGCCGUG--GAACCAC-CUGA--UUCCAUGCCGAACUCAGAA-
----GUGAAACGCGGUAGCG-CCG-AUGGU-AGUGUGGCA--UUU--GCCAUGUGAG-AG
-UAGGACACUGCCAGGCAU
#A._MEDIA(3)
UGCCUGGCGGC-CAUAGCGCCGUG--GAACCAC-CUGA--UCCCAUGCCGAACUCAGAA-
----GUGAAACGCGGUAGCG-CCG-AUGGU-AGUGUGGCA--UUU--GCCAUGUGAG-AG
-UAGGACACUGCCAGGCAU
#HYDROPHI(3)
UGCCUGGCGGC-CAUAGCGCCGUG--GAACCAC-CUGA--UCCCAUGCCGAACUCAGAA-
----GUGAAACGCGGUAGCG-CCG-AUGGU-AGUGUGGCA--UUU--GCCAUGCGAG-AG
-UAGGACACUGCCAGGCA
#PSYCHROE(3)
UGCUUAGCGAC-AAUAGUGCUGUA--GACCCAC-CUGA--UCCCAUUCCGAACUCAGUA-
----GUGAAACGCAGUAGCG-CCG-AUGGU-AGUGUGGGA--GUU--CCCAUGUGAG-AG
-UAGGACAUUGCUAAGCAU
#BNL-1(3)
UGUUUAGCGAC-CAUAGCGCUGUG--GCCCCAC-CUGA--UCCCAUUCCGAACUCAGCA-
----GUGAAACGCAGUUGCG-CCG-AUGGU-AGUGUGGGA--GUU--CCCAUGUGAG-AG
-UAGGACAUCGUUAAACAU
#O.SYMBIO(3)
UGCCUGGCAGC-CAUAGCGAUACG--GUACCAC-CUGA--CUCCAAUCCGAACUCAGAA-
----GUGAAACGUAAUAGCG-CCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGGACACUGCCAGGCAU
#REGIA(3)
UGCCUGGCAGC-CAUAGCGAUACG--GUACCAC-CUGA--CUCCAAUCCGAACUCAGAA-
----GUGAAACGUAAUAGCG-CCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGGACACUGCCAGGCAU
#P.SHIGEL(3)
UGCCUGGCGGC-CAUAGUGCGGUG--GUCCCAC-CUGA--CCCCAUGCCGAACUCAGAA-
----GUGAAACGCUGUAGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGUGAG-AG
-UAGGGAACUGCCAGGCAU
#V.NINI(3)
UGCCUGGCGAC-CAUAGCGUUUUG--GACCCAC-CUGA--UUCCAUUCCGAACUCAGAA-
----GUGAAACGAA-CAGCG-UCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGAACAUCGCCAGGCAU
#V.PATRI(3)
UGCCUGGCGAC-CAUAGCGUUUUG--GACCCAC-CUGA-CUUCCAUUCCGAACUCAGAA-
----GUGAAACGAAAUAGCG-CCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGGACAUCGCCAGGCAU
#BAROPHIL(3)
AGUCUGGAAAC-CAUAGCAUUGUG--GCCCCAC-CUGA--UCCCAUCUCGAACUCAGAA-
----GUGAAACGCAAUCGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGUGAG-AG
-UAGGUCAUUUCCAGGCGC
#Ps.Flour(3)
UUCUUGACGAC-CAUAGAGCAUUG--GAACCAC-CUGA--UCCCAUCCCGAACUCAGCA-
----GUGAAACGAUGCAUCG-CCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGGUCAUCGUCAAGAUU
#AZOTO.V(3)
UGCUUGACGAU-CAUAGAGCGUUG--GAACCAC-CUGA--UCCCAUCCCGAACUCAGCA-
----GUGAAACGACGCAUCG-CCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUAAG-AG
-UAGGUCAUCGUCAGGCGC
#PS.AERUG(3)
UGCUUGACGAU-CAUAGAGCGUUG--GAACCAC-CUGA--UCCCUUCCCGAACUCAGAA-
----GUGAAACGACGCAUCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGUGAG-AG
-UAGGUCAUCGUCAAGCUC
#ECTO.HAL(3)
UGCCUGGCGAC-CAUAGCGAGCGG--GAACCAC-CCGA--UCCGAUGCCGAACUCGGCA-
----GUGAAACCGCUCAGCG-CCG-AUGGU-AGUGCGAC-CACGCU-GUCGUGCGAG-AG
-UAGGUCAUCGCCAGGCCC
#ECTO.VAC(3)
UACCUGGCGGC-CAUGGCGAACCG--GAACCAC-CCGA--UCCCAUCUCGAACUCGGAA-
----GUGAAACGGUUCAGCG-CCG-AUGAU-AGUGUGGGG--CCU-CCCCAUGUGAA-AG
-UAGGUCACUGCCAGGCAC
#ECTO.MOB(4)
UCCUGGCGGC-CAUGGCGAACCG--GAACCAC-CCGA--UCCCAUCUCGAACUCGGAA--
---GUGAAACGGUUCAGCG-CCG-AUGAU-AGUGUGGGG--CCU-CCCCAUGUGAA-AG-
UAGGUCACUGCCAGGCAU
#C.MINUTI(4)
UGCUGGCGGC-CAUAGAGACUUG--GAACCAC-CUGA--UCCCGUCCCGAACUCAGAC--
---GUGAAACAGGUCUUCG-CCG-AUCCU-AGUGUGGGG--CCU-CCCCAUGCGAA-CC-
U-GA-CACCGCCAGGGCC
#L.PNEUMO(4)
UCCUGGCGAC-UAUAGCGAUUUG--GAACCAC-CUGA--UACCAUCUCGACCUCAGAA--
---GUGAAACAUUUCCGCG-CCA-AUGAU-AGUGUGAGG--CUU-CUUCAUGCGAA-AG-
UAGGUCAUCGCCAGGGU
#L.PNEUM2(4)
UCCUGGCGAC-UAUAGCGAUUUG--GAACCAC-CUGA--UACCAUCUCGAACUCAGAA--
---GUGAAACAUUUCCGCG-CCA-AUGAU-AGUGUGAGG--CUU-CCUCAUGCGAA-AG-
UAGGUCAUCGCCAGGGU
#L.LONGBE(4)
UCCUGGUGAC-UAUAGCGGUUUG--GAACCAC-CUGA--AUCCAUCUCGAACUCAGAA--
---GUGAAACGAACAUGCG-CCA-AUGAU-AGUGUGAGG--CUU-CCUCAUGUGAA-AG-
UAGGUCAUCGCCAGGGU
#L.BOZEMA(4)
UCCUGGCGAC-CAUAGCGGUUUG--GAACCAC-CUGA--CUCCAUCUCGAACUCAGAA--
---GUGAAACGAACCCGCG-CCA-AUGAU-AGUGUGAGG--UCU-CCUCAUGUGAA-AG-
UAGGUCAGCGCCAGGGU
#L.DUMOFF(4)
UCCUGGCGAC-CAUAGCGGUUUG--GAACCAC-CUGA--UUCCAUCUCGAACUCAGAA--
---GUGAAACGAACCCGCG-CCA-AUGAU-AGUGUGAGG--UCU-CCUCAUGUGAA-AG-
UAGGUCAUCGCCAGGGU
#P.DENITR(3)
UGCUUGACGAC-CAUAGAGCAUUG--GAACCAC-CUGA--UCCCAUUCCGAACUCAGCA-
----GUGAAACGAUGCAUCG-CCG-AUGGU-AGUGUGGGG--CUU-CCCCAUGUGAG-AG
-UAGGUCAUCGUCAAGCGC
#B.VISCOS(4)
GCCUGGUGGC-UAUGGCGAGGAG--UCCGAAC-CCGA--UCCCAUCCCGAACUCGGCC--
---GUUAAACUCCUCAGCG-CCA-AUGGU-ACUUCGUC--UCAA--GACGCGGGAG-AG-
UAGGUCGCUGCCAGGCCU
#R.VACUOL(6)
CUGGUGGC-CAUUGCGAGGAG--CCCCAAU-UCGA--UCUCACUCCGAACUCGGCC----
-GUUAAACUCCUCAGCG-CCG-AUGGU-ACUAUGUC--UCAA--GACCUGGGAG-AG-UA
GGUCGCUGCCAGGCCU
#T.MUTANS(6)
CUGGUGGC-CAUUGCGAGGAG--CCUGAAC-CCGA--CUCCACUCCGAACUCGGCC----
-GUUAAACUCCUCAGCG-CCG-AUGGU-ACUAUGUC--UCAA--GACCUGGGAG-AG-UA
GGUCGCUGCCAGGUCU
#M.AQUATI(5)
CCUGGUGGC-CAUUGCGAGGAG--CCCCAAC-CCGA--UCCCAUCCCGAACUCGGCC---
--GUUAAACUCCUCAGCG-CCG-AUGGU-ACUAUGUC--UCAA--GACCUGGGAG-AG-U
AGGUCGCUGCCAGGCCU
#S.STELLA(4)
GCCUGGCGGC-CCUAGCGAAGCG--CCUCAAC-CCGA--UCUCAUCCCGAACUCGGCC--
---GUUAAACGCUUCAGCG-CCA-AUGGU-ACUAUGGC--UUAA--GCCCUGGGAG-AG-
UAGGUCGCUGCCAGGCCU
#M.ORGANO(5)
CC-GGCGGC-CUGAGCGGUGUG--CCAGAAC-CCGA--UCCCAUCUCGAACUCGGCC---
--GUUAAACACACCAGCG-CCC-AUGGU-ACUGUGCU--CCAA--GACACGGGAG-AG-U
CGGUCGCCGCCAGGCU
#P.STUTZE(4)
GCCUGGUGGC-UAUGGCGAGGAG--GCCUAAC-CCGA--UCCCAUCCCGAACUCGGCC--
---GUUAAACUCCUCAGUG-CCG-AUGGU-ACUAUGUC--UUAA--GACCUGGGAG-AG-
UAGGUCGUCGCCAGGCCU
#P.AM1/M2(4)
GCCUGGCGGC-CUGAGCGGUGUG--GAAGAAC-CCGA--UCCCAUCUCGAACUCGGCC--
---GUUAAACACACCAGCG-CCC-AUGGU-ACUGUGUC--UCAA--GACACGGGAG-AG-
UCGGUCGCCGCCAGGCCC
#HYP.H1(3)
GACCUGGUGAU-UAUGGCGGGUGG--CCUGCAC-CCGA--UCCCAUUCCGAACUCGGCC-
----GUGAAACCGCCCUGCG-CCG-AUGGU-ACUUCGUC--UUAA--GACGCGGGAG-AG
-UAGGUCGUUGCCAGGUCC
#HYP.440(3)
GACCUGGUGAU-UAUGACGGAGUG--GCUGCAC-CCGA--UCCCAUCCCGAACUCGGCC-
----GUGAAACGCUCCAGCG-CCA-AUGGU-ACUGCGUC--UUAA--GACGUGGGAG-AG
-UAGGUCGUCGCCAGGUCU
#HYP.G10(3)
GACCUGGUGAU-UAUGGCGGGGUG--GCUGCAC-CCGA--UCCCAUUCCGAACUCGGCC-
----GUGAAACGCCCCUGCG-CCG-AUGGU-ACUUCGUC--UUAA--GACGCGGGAG-AG
-UAGGUCGUUGCCAGGUCU
#HYP.SP12(3)
GACCUGGUGAU-UAUGGCGGGGCG--GCUGCAC-CCGA--CCCCAUUCCGAACUCGGCC-
----GUGAAACGCCCCUGCG-CCG-AUGGU-ACUUCGUC--UUAA--GACGCGGGAG-AG
-UAGGUCGUUGCCAGGUCU
#HY.NP160(2)
UGACCUGGUGAU-UAUGGCGGGGUG--GCUGCAC-CCGA--UCCCAUUCCGAACUCGGCC
-----GUGAAACGCCCCAGCG-CCA-AUGGU-ACUUCGUC--UUAA--GACGCGGGAG-A
G-UAGGUCGUCGCCAGGUCU
#HYP.ZV(3)
GACCUGGUGAU-UAUGGCGGGUGG--UCUGCAC-CCGA--UCUCAUUCCGAACUCGGCC-
----GUGAAACCGCCCAGCG-CCA-AUGGU-ACUUCGUC--UUAA--GACGCGGGAG-AG
-UAGGUCGUCGCCAGGUCU
#H.VULGAR(3)
GACCUGGUGAU-UAUGGCGGGUGG--UCUGCAC-CCGA--UCUCAUUCCGAACUCGGCC-
----GUGAAACCGCCCAGCG-CCA-AUGGU-ACUUCGUC--UUAA--GACGCGGGAG-AG
-UAGGUCGUCGCCAGGUCU
#M.CAP1(4)
GCCUGGCGGC-CAGAGCGAGCGG--GAACCAC-CCGA--UCCCAUCCCGACCUCGGAA--
---GUGAAACCGCUUAGCG-CCG-AUGAU-AGUGCAAG--AAUA--CCUGUGCGAA-AG-
UAGGGAACUGCCAGGCUC
#M.AGILE(4)
GCUUGGUGAC-CAUAGCGAGCGU--GAACCAC-CCGA--UCCCAUCCCGAACUCGGAA--
---GUGAAACCGCUUAGCG-CCG-AUGAU-AGUGCGAC--AGGU-UGUCGUGCGAA-AG-
UAGGGAAUUGUMAAGCNN
#M.RUBRA(4)
GCUUGGUGAC-CAUAGCAAGCGU--GAACCAC-CCGA--UCCCAUCCCGAACUCGGAA--
---GUGAAACCGCUUAGCG-CCG-AUGAU-AGUGUGGC--AGGU-UGCCAUGUGAA-AG-
UAGGUCAUCGCMAAGCUN
#M.METHA(4)
NCUUGGUGAC-CAUAGCGAGCGU--GRACCAC-CCGA--UCCCAUCCCGAACUCGGAA--
---GUGAAACCGCUUUGCG-CCG-AUGAU-AGUGUGGC--AGUU-UGCCAUGUGAA-AG-
UAGGUCAUCGCMAAGN
#M.CAP2(4)
NYUUGGUGAC-CAUAGCGAGCGU--GACCCAC-CCGA--UCCCAUCCCGAACUCGGAA--
---GUGAAACCGCUUAGUG-CCG-AUGAU-AGUGUGGC--AAUU-UGCCAUGCGAA-AG-
UAGGGAAUUGCMAAAN
#M.TRICHO(3)
NNCUUGGUGAC-UAUAGUGAGCGU--GAACCAC-CCGA--UCCCAUCCCGAACUCGGAA-
----GUGAAACCGCUUAGCG-CCG-AUGAU-AGUGUGGC--CGUU-UGCCAUGCGAA-AG
-UAGGGCAUUGCMAAGYN
#M.PARVU(3)
NNCUUGGUGAC-CAUAGCGAGCGU--GAACCAC-CCGA--UCCCAUCCCGAACUCGGAA-
----GUGAAACCGCUUAGCG-CCG-AUGAU-AGUGUGGC--CGUU-UGCCAUGCGAA-AG
-UAGGGCAUUGCMAAGCN
#M.METHYL(5)
CUUGGGGAC-AAUAGCGGUUUG--GAACCAC-CCCU--UCCCAUCUCGAACAGGGCC---
--GUGAAACGAACUUGCG-CCA-AUGAU-AGUGUACU---CUU--CGUAUGCGAA-AG-U
AGGUCAUCCCCAAGCC
#ACE.SP1(3)
GAUCUGGUGGC-CAUGGCGGGAGC--AAAUCAG-CCGA--UCCCAUCCCGAACUCGGCC-
----GUCAAAUGCCCCAGCG-CCC-AUGAU-ACUCUGCC--UCAA--GGCACGGAAA-AG
-UCGGUCGCCGCCAGAYY
#ACE.SP2(3)
NNUCUGAUGGC-CAUGGCGGGAGC--AAAUCAC-CCGA--UCCCAUCCCGAACUCGGCC-
----GUCAAAUGCCCCAGCG-CCC-AUGAU-ACUCUGCC--UCAA--GGCACGGAAA-AG
-UCGGUCGCCGCCAGAUC
#HYP.SP.(3)
GACCUGGUGAU-UAUGGCGGGGUG--GCUGCAC-CCGA--UCCCAUUCCGAACUCGGCC-
----GUGAAACGCCCCUGCG-CCG-AUGGU-ACUUCGUC--UUAA--GACGCGGGAG-AG
-UAGGUCGUUGCCAGGUCU
#M.ORGANO(5)
CC-GGCGGC-CUGAGCGGUGUG--CCAGAAC-CCGA--UCCCAUCUCGAACUCGGCC---
--GUUAAACACACCAGCG-CCC-AUGGU-ACUGUGCU--CCAA--GACACGGGAG-AG-U
CGGUCGCCGCCAGGCU
#M.EXTORQ(4)
GCCUGGCGGC-CUGAGCGGUGUG--GAAGAAC-CCGA--UCCCAUCUCGAACUCGGCC--
---GUUAAACACACCAGCG-CCG-AUGGU-ACUGUGUC--UCAA--GACACGGGAG-AG-
UCGGUCGCCGCCAGGCCC
#T.MUTANS(6)
CUGGUGGC-CAUUGCGAGGAG--CCUGAAC-CCGA--CUCCACUCCGAACUCGGCC----
-GUUAAACUCCUCAGCG-CCG-AUGGU-ACUAUGUC--UCAA--GACCUGGGAG-AG-UA
GGUCGCUGCCAGGUCU
#R.VACUOL(6)
CUGGUGGC-CAUUGCGAGGAG--CCCCAAU-UCGA--UCUCACUCCGAACUCGGCC----
-GUUAAACUCCUCAGCG-CCG-AUGGU-ACUAUGUC--UCAA--GACCUGGGAG-AG-UA
GGUCGCUGCCAGGCCU
#B.VISCOS(4)
GCCUGGUGGC-UAUGGCGAGGAG--UCCGAAC-CCGA--UCCCAUCCCGAACUCGGCC--
---GUUAAACUCCUCAGCG-CCA-AUGGU-ACUUCGUC--UCAA--GACGCGGGAG-AG-
UAGGUCGCUGCCAGGCCU
#A.AQUATI(5)
CCUGGUGGC-CAUUGCGAGGAG--CCCCAAC-CCGA--UCCCAUCCCGAACUCGGCC---
--GUUAAACUCCUCAGCG-CCG-AUGGU-ACUAUGUC--UCAA--GACCUGGGAG-AG-U
AGGUCGCUGCCAGGCCU
#P.STUTZE(4)
GCCUGGUGGC-UAUGGCGAGGAG--GCCUAAC-CCGA--UCCCAUCCCGAACUCGGCC--
---GUUAAACUCCUCAGUG-CCG-AUGGU-ACUAUGUC--UUAA--GACCUGGGAG-AG-
UAGGUCGUCGCCAGGCCU
#P.ENHYDR(3)
GAUCUGGUGGU-UAUCGCGCGGGG--CCCGAAC-CCGA--UCCCAUCCCGAACUCGACC-
----GUUAAAUCCCGUCGCG-CCA-AUGGU-ACUAAGUC--UCAA--GACUUGGGAG-AG
-UAGGUCGCCGCCAGGUCU
#CAU.C12(3)
GACCCGGCGGC-UUUGCCGGGGGU--UCCCCAC-CCGA--UCCCAUUCCGAACUCGGUC-
----GUUAAGUCCCCCUGGG-CCA-AUGGU-ACUUCGUC--UCAA--GGCGCGGGAG-AG
-UAGGUCGCCGCCAGGUCU
#CAU.C90(3)
GACCUGGCGGC-UAUGCCGGGGGU--UCCCCAC-CCGA--UCCCAUUCCGAACUCGGUC-
----GUUAAGCCCUCCUGGG-CCA-AUGGU-ACUUCGUC--UUAA--GGCGCGGGAG-AG
-UAGGUCGCCGCCAGGCCC
#CA.BC101(3)
GACCUGGUGGC-UAUGUCGGUGGU--UCCCCAC-CCGA--UCCCAUUCCGAACUCGGUC-
----GUUAAGCCCUCCAGAG-CCG-AUGGU-ACUUCGUC--UUAA--GGCGCGGGAG-AG
-UAGGUCGCCGCCGGGUCU
#CAU.C107(3)
GACCUGGUGGC-UAUGUCGGAGGU--UCCCCAC-CCGA--UCCCAUUCCGAACUCGGUC-
----GUUAAGCCCUCCAGAG-CCG-AUGGU-ACUUCGUC--UUAA--GGCGCGGGAG-AG
-UAGGUCGCCGCCGGGUCU
#CAU.C6(3)
GACCCGGUGGC-UAUGUCGGAGGU--UCCCUAC-CCGA--UCCCAUUCCGAACUCGGUC-
----GUUAAAGCCUCCAGAG-CCG-AUGGU-ACUUCGUC--UUAA--GUCGCGGGAG-AG
-UAGGUCGCCGCCGGGUCU
#CAU.BC22(3)
GACCCGGCGGC-UAUGUCGGAGGU--UCCCCAC-CCGA--UCCCAUUCCGAACUCGGUC-
----GUUAAGCCCUCCAGAG-CCA-AUGGU-ACUUCGUC--UCAA--GGCGCGGGAG-AG
-UAGGUCGCCGCCGGGCCU
#CAU.P105(3)
GACCCGGCGGC-UAUGUCGGAGGU--UCCCCAC-CCGA--UCCCAUUCCGAACUCGGUC-
----GUUAAGCCCUCCAGAG-CCG-AUGGU-ACUUCGUC--UUAA--GGCGCGGGAG-AG
-UAGGUCGCCGCCGGGCCC
#HYP.OLIG(3)
GACCCGGUGGU-UAUGGCCAGGGA--UCCCCAC-CUGA--UCCCAUCCCGAACUCAGUC-
----GUUAAGUCCCCUUGCG-CCA-AUGGU-ACUACGUC--UUAA--GGCGUGGGAG-AG
-UAGGUCGCUGCCGGGUCC
#R.MOOZER(3)
AGCUUGGUGGC-CAUAGCAUGAGU--GAAACAC-ACGA--UCCCAUCCCGAACUCGAAC-
----GUGAAACCUCAUAGCG-CUA-AUGGU-ACUAUGUC--AUAA--GUCAUGGGAG-AG
-UAAGUCACUGCCAAGCUU
#R.PROWAZ(3)
AGCUUGGUGGU-CAUAGCAUGAGU--GAAACAC-ACGA--UCCCAUCCCGAACUCGAAC-
----GUGAAACCUCAUAGCG-CUA-AUGGU-ACUAUGUC--AUAA--GCCAUGGGAG-AG
-UAAGCCGCCGCCAGGCUU
#RH.SPHAE(5)
UCUGGUGGC-CAUAGCACGAGC--AAAACAC-CCGA--UCCCAUCCCGAACUCGGCA---
--GUUAAGUGCCGUCGCG-CCA-AUGGU-ACUGCGUC--UCAA--GACGUGGGAG-AG-U
-GGUCGCCGCCAGACC
#AC.MB58/(3)
GAUCUGGUGGC-UAUGGCGGGAGU--AAAUCAC-CCGA--UCUCAUCCCGAACUCGGCC-
----GUCAAAUGCCUCAGCG-CCC-AUGAU-ACUCGUCC--UCAA--GGCACGGAAA-AG
-UCGGUCGCCGCCAGACCC
#RH.CAPSU(5)
UUUGGUGGU-CAUAGGCUUGGC--UAAACAC-CCGA--UCCCAUCCCGAACUCGGCA---
--GUUAAGGGCCAACACG-CCG-AUGGU-ACUGCGUC--UCAA--GACGUGGGAG-AG-U
AGGUCACCGCCAAACC
#N.WINGO(2)
CGACCUGGUGGU-UCUAGCGAGGAG--CUUGAAC-CCGA--UCCCAUCCCGAACUCGGCC
-----GUUAAACUCCUCAGCG-CCA-AUGGU-ACCAUGGC--UUAA--GCCCUGGGAG-A
G-UAGGUCGCUGCCAGG
#C.CRESC(2)
CGACCUGGUGGC-UAUGCCGGGGGU--UACCCAC-CCGA--UCCCAUUCCGAACUCGGUC
-----GUUAAGUCCCCCUGGG-CCA-AUGGU-ACUUCGUC--UCAA--GGCGCGGGAG-A
G-UAGGUCGCCGCCAGG
#S.HUMOSA(2)
CGACCUGGUGGC-CCAAGUGAGGGG--GCUGCAC-CCGA--UCCCAUCCCGAACUCGGCC
-----GUGAAAACCCUCAGCG-CCG-AUGGU-ACUGCGUC--UUAA--GGCGCGGAAG-A
G-UAGGUCGCCGCCAGG
#A.CYCLOC(2)
CGACCUGGUGGU-UCUGGCGGGGUG--GCUGCAC-CCGU--UCCCAUUCCGAACACGGCC
-----GUGAAACGCCCCAGCG-CCG-AUGGU-ACUUCGUC--UUAA--GACGCGGGAG-A
G-UAGGUCGCUGCCAGGUCU
#H.VULGAR(2)
CGACCUGGUGAU-UAUGGCGGGGUG--GCUGCAC-CCGA--UCCCAUUCCGAACUCGGCC
-----CUGAAACGCCCCAGCG-CCA-AUGGU-ACUCUGUC--UUAA--GACGCGGGAG-A
G-UAGGCCGCCGCCAGGU
#H.IFAM(2)
CGACCUGGUGAU-UAUGGCGGGGUG--GCUGCAC-CCGA--UCCCAUUCCGAACUCGGCC
-----GUGAAACGCCCCUGCG-CCG-AUGGU-ACUUCGUC--UUAA--GACGCGGGAG-A
G-UAGGUCGUUGCCAGGU
#T.ACIDOP(2)
CGACCUGGUGGC-CAUUGCGGGGGG--CCCGCAC-CCGA--UCCCAUCCCGAACUCGGCC
-----GUGAAAACCCCCAGCG-CCC-AUGGU-ACUGUGCC--UCAA--GGCACGGGAG-A
G-UAGGUCGCCGCCAGGUCC
#A.CRYPTU(2)
CGACCUGGUGGC-CAUUGCGGGGAG--CCUGCAC-CCGA--UCCCAUCCCGAACUCGGCC
-----GUGAAAAUCCCCAGCG-CCC-AUGGU-ACUGUGCC--UCAA--GGCACGGGAG-A
G-UAGGUCGCCGCCAGGUCCUC
#H.POLYMO(2)
CGACCUGGUGGU-AAUGGUAGGGGG--UCUGGAC-CGGA--UCCCAUCCCGAACUCCGUC
-----GUUAAGCCCCCUUGCG-CCA-AUGGU-ACCACGUC--UUAA--GGUGUGGGAG-A
G-UAGGUCGCUGCCGGGUC
#V.SPINOS(5)
UCCGGUGAC-GAUAGCGAGAAG--GUCACAC-CCGU--UCCCAUACCGAACACGGAA---
--GUGAAGCUUCUCAGCG-CCG-ACGGU-AGUUCGGGG-CUGC-CCUCCCGUGAG-AG-U
AGGACGUUGCCGGC
#HALOMONA(3)
CGC-----GAC-CAUAG---------GCACCAC-CUGU--UCCCAUGCCGAACUCAGCA-
----G-GAAACCGCUCAGCG-CCG-AUGGU-AGUG--------GA-GCCCAUGCGAU-AG
-UAGUGCAUCGU
#C.VOILAC(4)
GucuGGUGGC-CAUAGCGAGGUG--GUCCCAC-GCCU--UCCCAUCCCGAAUAGGACC--
---GUGAAACGCCUUAGCG-CCG-AUGAU-AGUGUGGC----AUUUGCCAUGUGAA-AG-
UAGGACACCGCCAGAUG
#PS.BATHY(3)
CGCCUGACGAC-CAUAGCGAGCGU--GAACCAC-CUGA--UCCCAUGCCGAACUCAGCA-
----GUGAAACCGCUUAGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGUGAG-AG
-UAGGUCAUCGUCAGGCAC
#PS.E266(3)
CGCCCGGU----CAUAGCGGCGG---GAACCAC-CUGA--UCCCAUCCCGAACUCAGAA-
----GUGAAACCUGCCUGCG-CCG-AUGGU-ACUUUGUC---UUAA-GGCACGGGAG-AG
-UAGGUCACCGCCGGGC
#ALTEROMO(3)
UGC-UGACGAC-AACAGCAUGAUG--GCACCAC-CUGA--UCCCUUCCCGAACUCAGAA-
----GUGAAACAUCAUUGCG-CCU-AUGGU-AGUGUGGG---UUC--GCCAUGUGAG-AG
-UAGGUC-UCGUCAGGCU
#PS.ACIDO(11)
GAC-CAUAGCAAGUUG--GUACCAC-UCCU--UCCCAUCCCGAACAGGACA-----GUGA
AACGACUUUGCG-CCG-AUGAU-AGUGCGGG---UUC--CC-GUGUGA--AG-UAGGUCA
UCGUCAGGCU
#CHROMATI(3)
UCCCUGGCGGC-CAUAGAGACUUG--GAACCAC-CUGA--UCCCGUCCCGAACUCAGAC-
----GUGAAACAGGUCUUCG-CCG-AUCCU-AGUGUGGGG--CGC-CCCUAU--GAA-CU
-CAGGGCACCGCCAGGGC
#PS.MLTBR(2)
CUCCCUGGUGAA-AUUAGCGCUGUG--GAACCAC-CCGA--UCCCAUCCCGAACUCGGAA
-----GUGAAACGCAGCUGCG-CCG-AUGGU-AGUGUGGC---CUAA-GCCAUGCGAG-A
G-UAGGUCAUCGCCAGGGUU
#PS.MALTO(3)
UCCCUGGUGAA-AAUAGCGCUGUG--GAACCAC-CCGA--UCCCAUCCCGAACUCGGAA-
----GUGAAACGCAGCUGCG-CCG-AUGGU-AGUGUGGC---UCAA-GCCAUGCGAG-AG
-UAGGUCAUCGCCAGGGUU
#PS.15668(52)
GAACUCGGAA-----GUGAAACGACUUUGCG-CCG-AUGA--AGUGCGGG---UU---CC
CGUGUGAA-AG-UAGGUCA-CGCCAGG
#PS.DIMIN(3)
GACCUGGUGGC-UCUGUCGGAGGU--UCCCCAC-CCGA--UCCCAUUCCGAACUCGGUU-
----GUUAA--GAUCCAGAG-CCG-AUGGU-ACUUCGUC---UUAA-GGCGCGGGAG-AG
-UAGGUCGCCGCC-GGGCC
#PS.CEPAC(4)
GCCUGAUGAC-CAUAGCGAGUCG--GUCCCAC-UCCU--UCCCAUCCCGAACAGGACC--
---GUGAAACGACUCUACG-CCG-AUGAU-AGUGCGG---AUCU---CCGUGUGAA-AG-
UAGGUAAUCGUCAGGCCU
#Rc.Gelat(4)
GCCUGAUGAC-CAUAGCGAGGUG--GUCCCAC-UCCU--UCCCAUCCCGAACAGGAUA--
---GUGAAACGCCUUUGCG-CCG-AUGAU-AGUGCGGG--UUC---CCCGUGUGAA-AG-
UAGGACAUCGUCAGC
#Ps.solan(5)
CCUGGAGAC-UAUAGCGAGUCG--GUACCAC-CCCU--UCCCAUCCCGAACAGGACC---
--GUGAAACGACUCCGCG-CCG-AUGAU-AGUGCGG---AUUC---CCGUGUGAA-AG-U
AGGUCAUCGccAGG
#Ps.Indig(3)
UGUCUGGUGGC-CAUAGCGAGGUG--GUCCCAC-GCCU--UCCCAUUCCGAACAGGACC-
----GUGAAACGCCUUAGCG-CCG-AUGAU-AGUGCAG---AUAC---CUGUGUGAA-AG
-UAGGACACCGCCAGAGAU
#MARINE.S(3)
UGCUUGGCGAC-GAUAGCGUUUUG--GACCCAC-CUGA--CYYYAUGCCGAACUCAGUA-
----GUGAAACGAAACAGCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGUGAG-AG
-UAGGACAUCGCCAGUCAU
#AEROMONA(3)
UGCCUGGCGGC-CAUAGCGCCAUG--GAACCAC-CUGA--UCCCAUGCCGAACUCAGAA-
----GUGAAACGUGGYAGCG-CCG-AUGGU-AGUGUG----------GCCAU--GAG-AG
-UAGGACACUGCCAGGCAU
#ALCALIGE(3)
CG------GAC-CAUAG-------------CAC-----------AUCCCGAACAG-----
------GAAACG-------G-CCG-AUGGU-AG---------------------------
--AGGAC
#RIFTIA_A(3)
UGCU-GGCGAC-AAUAGCAAGAGU--GAACCAC-CUGA--UCCCUUCCCGAACUCAGAA-
----GUGAAACCUCUUAGCG-CUG-AUGGU-AGUGUGGGG--UUA--CCCAUGUGAG-AG
-UAAGUCAUCGCCAGCUU
#RFTIA.E7(3)
UUCUUGACGAC-CAUAGAGCAUUG--GAACCAC-CUGA--UCCCAUCCCGAACUCAGUA-
----GUGAAACGAUGCAUCG-CCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGGUCAUCGUCAAGAUU
#RFTIA.G3(3)
UGCUUGGUGAC-AAUAGCGUUUUG--GACCCAC-CUGA--CCCCAUGCCGAACUCAGUA-
----GUGAAACGAAACAGCG-CCG-AUGAU-AGUGUAGC--AUUU--GCUAUGUGAA-AG
-UAGGACAUUACCAGGCUC
#RFTIAHSP(3)
UGCUUGGUGAC-AAUAGCGUUUUG--GACCCAC-CUGA--CCCCAUGCCGAACUCAGCA-
----GUGAAACGAAACAGCG-CCG-AUGAU-AGUGUAGC--AUUU--GCUAUGUGAA-AG
-UAGGACAUUACCAGGCUC
#RFTIA.SB(3)
UGCCUGGCGGC-CAUAGCGAGUUG--GUACCAC-CCGA--UCCCAUCCCGAACUCGGAA-
----GUGAAACGACUUAGCG-CCG-AUGAU-AGUGUGGGG--UCU-CCCCAUGUGAA-AG
-UAGGUCACUGCCAGGCG
#THIO.M1(3)
UGCCUGGUGGC-CAUAGCGAGCGG--GAACCAC-CCGA--UCCCAUUCCGAACUCGGAA-
----GUGAAAACGCUUAGCG-CCG-AUGAU-AGUAUGGGG--UCU-CCCUAUGCGAA-AG
-UAGGACACUGCCAGGCUU
#SOLEMYA(3)
UGCCCGGCGGC-AAUAGAACAUUG--GAACCAC-CUGA--UCCCAUACCGAACUCAGAA-
----GUGAAACGAUGUAUCG-CCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGGUCACUGCCGGGCUU
#C.MAGSMB(3)
UGCCUAGCGAC-AAUAGCGAGUGU--GACCCAC-CUGA--UCCCAUCCCGAACUCAGAA-
----GUGAAACCACUUAGCG-CCG-AUGGU-AGUGUGGGG--UUU-CCCCAUGUGAG-AG
-UAGGACAUUGCUAGGUU
#My.albus(3)
UGCUUGGUGAC-CAUAGCGAGCGU--GAACCAC-CCGA--UCCCAUCCCGAACUCGGCA-
----GUGAAACCGCUUAGCG-CCA-AUGAU-AGUGCGACA--GGU-UGUCGUGCGAA-AG
-UAGGGAAUCGCCAAGCUU
#ALCALIGE(3)
UGCUUGACGAC-CAUAGAGCGUUG--GAACCAC-CUGA--UCCCAUCCCGAACUCAGCA-
----GUGAAACGACGCAUCG-CCG-AUGGU-AGUGUGGGG--UCU-CCCCAUGUGAG-AG
-UAGGUCAUCGUCAAGCUU
#T.NEAPOL(4)
GCCUGGUGUC-CAUAGAGCGGUG--GAACCAC-CUGU--UCCCAUCCCGAACACAGAA--
---GUGAAACGCCGCAUCG-CCG-AUGAU-AGUGUGGGG--UCU-CCCCAUGUGAA-AG-
UAGGUCAACGCCAGGCUC
#THMCROSP(4)
GCUUGGCGAC-CAUAGCGGAAUG--GAACCAC-CUGA--UCCCAUCUCGAACUCAGAA--
---GUGAAACGUUCCAGCG-CCA-AUGGU-AGUGUGGGG--UUU-CCCCAUGCGAG-AG-
UAGGUCAUCGCCAAGCU
#THMCROLK(4)
GCUUGGGGAC-AAUAGCAAGAUG--GAACCAC-CUGA--UCCCUUUCCGAACUCAGAA--
---GUGAAACGUUUUAGCG-CCG-AUGGU-AGUGUGUC--AGUU--GGCAUGUGAG-AG-
UAGGUCAUCCCCAAGCU
#Thitrx_J(1)
UUUGCCUGGUGUC-CAUAGAGCACUG--GAACCAC-CUGA--UCCCAUCCCGAACUCAGA
A-----GUGAAACGGUGCAUCG-CCG-AUGGU-AGUGUGGGG--CCU-CCCCAUGUGAG-
AG-UAGGUCAACGCCAGGCGC
#Thitrx_3(3)
UGCCUGGUGUC-CAUAGAGCACUG--GAACCAC-CUGA--UCCCAUCCCGAACUCAGAA-
----GUGAAACGGUGCAUCG-CCG-AUGGU-AGUGUGGGG--CCU-CCCCAUGUGAG-AG
-UAGGUCAACGCCAGGCGC
#LEPTHRIX(2)
aUGCCUGACGAC-CAUAGCGAGGUG--GUCCCAC-UCCU--UCCCAUCCCGAACAGGACA
-----GUGAAACGCCUCAGCG-CCG-AUGAU-AGUGCGC---AUU---CGCGUGUGAA-A
G-UAGGUCAUCGUCAGGCU
#CHIN13.2(4)
GUUUGGCGGC-CAUAGCGUCUUG--GACCCAC-CCCU--UCCCAUCCCGAACAGGGAC--
---GUGAAACGAGACAGCG-CCG-AUGAU-AGUGUGG---AUUA--CCCAUGCGAA-AG-
UAGGUCACCGCCAGACAA
#Vt.Begg.(3)
CGCCUGACGAC-CACAGCGACUGU--GAACCAC-CCGA--CCCCAUCUCGAACUCGGUA-
----GUGAAACCAGUCAGCG-CCG-AUGAU-AGUGUGGC--AUAU--GCCAUGUGAA-AG
-UAGGUCAUCGUCAGGCU
#Vt.fili.(4)
GCCUGAUGAC-CAUAGCAAGGUG--GUCCCAC-UCCU--UCCCAUCCCGAACAGGACA--
---GUGAAACGCCUUAGCG-CCG-AUGAU-AGUGCGG---UUCUC--CCGUGUGAA-AG-
UAGGACAUCGUCAGGCU
#P.CEPAC1(4)
GCCUGACGAC-CAUAGCGAGUCG--GUCCCAC-UCCU--UCCCAUCCCGAACAGGACC--
---GUGAAACGACUCUACG-CCG-AUGAU-AGUGCGG---AUUC---CCGUGUGAA-AG-
UAGGUAAUCGUCAGGCCU
#Vt.ster.(3)
UGUUUGACGAC-CAUAGCGAGUUG--GUCCCAC-GCCU--UCCCAUCCCGAACAGGACC-
----GUGAAACGACUUAGCG-CCG-AUGAU-AGUGUGG---AUUA--CCCAUGUGAA-AG
-UAGGUCAUCGUCAAACGC
#BG.ALBA(3)
UUCUUGGCGAC-CAUAGCAAAUAG--GAACCAC-CCGA--CCCCAUCCCGAACUCGGUA-
----GUGAAACUGUUCUGCG-CCG-AUGAU-AGUGUGGA--UACU-CUCCAUGUGAA-AG
-UAGGUUAUCGCCAAGAGc
#P.CEPAC2(3)
GGCCUGAUGAC-CAUAGCGAGUCG--GUCCCAC-CCCU--UCCCAUCCCGAACAGGACC-
----GUGAAACGACUCUACG-CCG-AUGAU-AGUGCGG---AUUC---CCGUGUGAA-AG
-UAGGUAAUCGUCAGGCU
#A._TUMEF(2)
CGACCUGGUGGU-CAUCGCGGGGCG--GCUGCAC-CCGU--UCCCUUUCCGAACACGGCC
-----GUGAAACGCCCCAGCG-CCA-AUGGU-ACUUCGUCU----CAAGACGCGGGAG-A
G-UAGGUCGCUGCCAGGUCU
#A.SERPEN(3)
UGCUUGGCGGC-CAUAGCGAGUUG--GUACCAC-CCCU--UCCCUUCCCGAACAGGACC-
----GUGAAACGACUCAGCG-CCG-AUGAU-AGUGCAG---AUCC---CUGUGUGAA-AG
-UAGGUCUCCGCCAAGCU
#A.CALCOA(4)
GGCUGGCGAC-CAUAGCAAGAGU--GAACCAC-CUGA--UCCCUUCCCGAACUCAGAA--
---GUGAAACCUCUUCGCG-CUG-AUGGU-AGUGKGGG---UUA--CCCAUGUGAG-AG-
UAAGUCAUCGCCAGCUU
#My.clara(4)
GUUUGGGGAC-AAUAGCGGUUUG--GAACCAC-CCCU--UCCCAUCUCGAACAGGGCC--
---GUGAAACGAACUUGCG-CCA-AUGAU-AGUGUAC----UCUU-CGUAUGCGAA-AG-
UAGGUCAUCCCCAGGCU
#Ml.gluc.(4)
GUUUGGGGAC-AAUAGCAGUUUG--GAACCAC-CCCU--UCCCAUCUCGAACAGGGCC--
---GUGAAACGAACUUGCG-CCA-AUGAU-AGUGUAC----UCUU-CGUAUGCGAA-AG-
UAGGUCAUCCCCAGGCU
#Mm.methy(4)
GUCUGGCGGC-CAUAGCGAAUUG--GAACCAC-CCCU--UCCCAUCUCGAACAGGGCC--
---GUGAAACGAUUCUGCG-CCA-AUGAU-AGUAUAC----UUCU-CGUAUGCGAA-AG-
UAGGUCACCGCCAGGCU
#Thiovul.(1)
UUUGGUUGGUGAU-UACAGAGAAAAG--GUCACAC-UCAG--CUCCAUUUCGAACCUGAA
A-----GUUAAGCUUUUCUUCG-UCG-AUAAU-ACUGCCCCC--UAC-GGGGGUGGGAC-
GG-UAGAUCGUUGCCAACCAUu
#PAR.DEN1(4)
GUCUGGUGGC-CAAAGCACGAGC--AAAACAC-CCGA--UCCCAUCCCGAACUCGGCC--
---GUUAAGUGCCGUAGCG-CCA-AUGGU-ACUGCGUCA----AAAGACGUGGGAG-AG-
UAGGUCACCGCCAGACC
#PAR.DEN2(4)
GUCUGGUGGC-CAAAGCACGAGC--AAAACAC-CCGA--UCCCAUCCCGAACUCGGCC--
---GUUAAGUGCCGUCGCG-CCA-AUGGU-ACUGCGUCA----AAAGACGUGGGAG-AG-
UGGAUCACCGCCAGACC
#THRMS.AQ(1)
AAUCCCCCGUGCC-CUUAGCGGCGUG--GAACCAC-CCGU--UCCCAUUCCGAACACGGA
A-----GUGAAACGCGCCAGCG-CCG-AUGGU-ACUGGGACC--GCAGGGUCCUGGGAG-
AG-UAGGUCGGUGCGGGGGAU
#RSP.RUB(2)
UGGCCUGGUGGU-CAUUGCGGGCUC--GAAACAC-CCGA--UCCCAUCCCGAACUCGGCC
-----GUGAAAGAGCCCUGCG-CCA-AUGGU-ACUGCGUC---UUAA-GGCGUGGGAG-A
G-UAGGUCGCCGCCAGGCCU
#RHODOPS2(5)
UCUGGUGGC-CAUAGCACG-AGC-AAAACAC-CCGA--UCCCAUCCCGAACUCGGUA---
--GUUAAGUGCCGUCGCG-CCA-AUGGU-ACUGCGUC---UUA-AGACGUGGGAG-AG-U
AGGUUGCCGCCAGACC
#RHODOPSE(4)
GCCUGACGAC-CAUAGCGAGGUG--GUCCCAC-UCCU--UCCCAUCCCGAACAGGAUA--
---GUGAAACGCCUUUGCG-CCG-AUGAU-AGUGCGGG---UUC--CCCGUGUGAA-AG-
UAGGACACCG-CAGG
#RHODOMIC(29)
GCCCUAC-UCGA--UCCCAUCUCGAACUCG----------GAAACG--------------
--------------------------GGGAG-AG-U-------GC-CAGGU
#RHDOSP.1(2)
UG-------------------------GAAACAC-CGAA--UCCCAUCCCGAACUCG---
--------------------G-CCA-AUGGU-ACUG-----------------GGGAG-A
G-U-------GC-CAG
#PRO.EXTO(6)
CUGGUGGC-CUGAGCGGUGUGC-CCAGAAC-CCGA--UCCCAUCUCGAACUCGGCC----
-GUUAAACACACCAGCG-CCC-AUGGU-ACUGUGUC---UCAA-GACACGGGAG-AG-UC
GGUGCCGCCAGGCCU
#ERY.LONG(2)
UUGCUUGGUGGU-CCUAGCGACUGU--GACCCAC-CCGA--UCCCAUCUCGAACUCGGCC
-----GUGAAACCAGUUAGCG-CCG-AUGGU-ACUAUGUC---UUAA-GGCAUGGAAG-A
G-UAGGUG-CCGCCAGGCAU
#T.THIOPA(3)
UGUCUGACGAC-CAUAGCAGAGUG--GAACCAC-CCCU--UCCCAUCCCGAACAGGACG-
----GUGAAACGCUCCCGCG-CCA-AUGAU-AGUAGGC---ACCU--CGCCUGUGAA-AG
-UAGGUCAUCGUCAGACC
#T.THIOOX(3)
UGUCUGGCGGC-CAUAGCGCAGUG--GAACCAC-CCCU--UCCCAUCCCGAACAGGACC-
----GUGAAACACUGCAGCG-CCU-AUGAU-AGUUGAGGG--CCU-CCCUCCGCGAA-AG
-UCGGUCACCGCCAGACAC
#T.FERROX(3)
UGUCUGGCGGC-CAUAGCGCAGUG--GAACCAC-CCCU--UCCCAUCUCGAACAGGACC-
----GUGAAACGCUGCAGCG-CCU-AUGAU-AGUUGAGGG--UCU-CCCUCCGCGAA-AG
-UCGGUCACCGCCAGACAC
#T.INTRME(2)
AGGCCUGAUGAC-CAUGGCGAACUG--GAACCAC-CCCU--UCCCAUCCCGAACAGGGCC
-----GUGAAACAGUUCAGCG-CCG-AUGAU-AGUGCGC---AUU---CGCGUGUGAA-A
G-UAGGACAUCGUCAGGCU
#T.NOVELL(2)
CGGCCUGGUGGC-CAUUGCGAGGAG--CCUGAAC-CCGA--UCCCAUCCCGAACUCGGCC
-----GUUAAACUCCUCAGCG-CCG-AUGGU-ACUAUGUC---UUAA-GACCUGGGAG-A
G-UAGGUCGCUGCCAGGCCU
#LEGIONLA(4)
UCUUGGCGAC-UAUAGCGAUUUG--GAACCAC-CUGA--UACCAUCUCGAACUCAGAA--
---GUGAAACAUUUCCGCG-CCA-AUGAU-AGUGUGAGG--CUU-CCUCAUGCGAA-AG-
UAGGUCAUCGCCAGGAU
#A.FAECAL(4)
GCUUGACGAC-CAUAGCGAGGUG--GUCCCAC-ACCU--UCCCAUCCCGAACAGGAUU--
---GUGAAACGCCUUUGCG-CCG-AUGAU-AGUGGAC----GGAC--GUCUGUGAA-AG-
UAGGUCAUCGUCAAGCU
#A.DENITR(1)
UUAGCCUGACGAC-CAUAGCAAGGUG--GUACCAC-UCCU--UCCCAUCCCGAACAGGAC
A-----GUGAAACGCCUUUGCG-CCG-AUGAU-AGUGGAC----GGAC--GUCUGUGAA-
AG-UAGGUCAUCGUCAGGCU
#RHO.PALU(2)
CGGCCUGGUGGU-UCUAGCGAGGAG--CCUGAAC-CCGU--UCCCAUCCCGAACACGGCC
-----GUUAAACUCCUCAGCG-CCA-AUGGU-ACUCCGUC---UCAA-GACGCGGGAG-A
G-UAGGUG-CCGCCAGGCCU
#RHO.CAPS(4)
GUUUGGUGGU-CAUAGCGACGGC--UAAACUC-CCGA--UCCCUUCCCGAACUCGGCC--
---GAUAAGGGCCGUCACG-CCA-AUGGU-ACUGCGUC---UCAA-GACGUGGGAG-AG-
UAGGUCACCGCCAAACC
#RHO.DENI(6)
UUGGUGGC-CAUAGUACGAGU--AAAAUAC-CCGA--UCCCAUCCCGAACUCGGCA----
-GUUAAGUGCCGUCGCG-CCA-AUGGU-ACUGCGUC---UGAA-GACGUGGGAG-AG-UA
GGUCGCCGCCAGACC
#RHO.SPHA(5)
UCUGGUGGC-CAUAGCACGAGC--AAAACAC-CCGA--UCCCAUCCCGAACUCGGUA---
--GUUAAGUGCCGUCGCG-CCA-AUGGU-ACUGCGUC---UUAA-GACGUGGGAG-AG-U
AGGUUGCCGCCAGACC
#RHO.CAP2(3)
CGUUUGGUGGU-CAUAGCGUUGGC--UAAACAC-CCGA--UCCCAUCCCGAACUCGGCC-
----GUUAAGGGCCAACACG-CCG-AUGGU-ACUGCGUC---UCAA-GACGUGGGAG-AG
-UAGGUCACCGCCAAACC
--------------51C84D152DB0
Content-Type: text/plain; charset=us-ascii; name="sort.perl"
Content-Transfer-Encoding: 7bit
Content-Disposition: inline; filename="sort.perl"
#! /usr/bin/perl -w
print "From which tree file do you want to get the names of the
bacteria?\n?";
$filename = <STDIN>;
chomp ($filename);
open (FILE, $filename) || die "can not open $filename for reading: $!";
open (LIST, ">nega_list") || die "can not create the file: $!";
for ($i = 1; <FILE>;)
{
if (/!|\+/)
{
s/[^A-Z]*//i;
print LIST;
$i++ if ($_ ne "");
}
}
print LIST "Total: $i\n";
close (LIST);
close (FILE);
open (FLAT, "negative.gb3");
open (JOIN_FLAT, ">join_flat.gb");
foreach (<FLAT>)
{
s/\n//;
s/#|%/\n#/;
# s/\)/\)\n/;
print JOIN_FLAT;
}
close (JOIN_FLAT);
close (FLAT);
open (LIST1,"nega_list") || die "can not open: $! ";
open (SORT_FLAT, ">sort_flat.gb") || die "can't open for writing: $!";
while (defined($name = <LIST1>))
{
chomp ($name);
open (FLAT1, "join_flat.gb");
while (defined($line = <FLAT1>))
{
if ($line =~ m/\Q$name\E/si)
{
print SORT_FLAT $line;
last;
}
}
close (FLAT1);
}
close (LIST1);
close (FLAT1);
close (SORT_FLAT);
--------------51C84D152DB0--
------------------------------
Date: 12 Nov 1998 15:49:15 -0600
From: tye@fohnix.metronet.com (Tye McQueen)
Subject: Re: Win32::Process -- Inheriting IO::Socket Handles
Message-Id: <72fl4r$dv4@fohnix.metronet.com>
George Kuetemeyer <george.kuetemeyer@mail.tju.edu> writes:
[...]
) 3. Use 'select $client_handle' to select that handle as my default. No
) error returned, so assuming that's OK.
) 4. Go to a subroutine that kicks off a Win32::Process object,
) specifying that the handles of calling process are inherited (see below
) for a sample). The process runs, but I/O continues to happen in the
) server window only, via printing to the console screen.The called
) process is actually a one-line Perl script that prints "Hello World". I
) want that I/O to be sent to the calling client instead. Any thoughts
) would be appreciated.
The state of Perl's select() is not preserved across a CreateProcess().
You could *TRY* to save STDOUT, dup() your $client_handle to STDOUT,
CreateProcess(), restore STDOUT; but I can't promise that it would work:
local( *SAVEOUT );
open( SAVEOUT, ">&STDOUT" ) or die "Can't save STDOUT: $!\n";
open( STDOUT, ">&".fileno($client_handle) )
or die "Can't dup client handle to STDOUT: $!\n";
Win32::Process::Create(...) ...;
open( STDOUT, ">&SAVEOUT" ) or die "Can't restore STDOUT: $!\n";
close( SAVEOUT ) or warn "Can't close SAVEOUT: $!\n";
That should work on a Unix system but I'm not sure if Win32 file
handles, sockets, and inheritance are similar enough for it to
work there as well.
--
Tye McQueen Nothing is obvious unless you are overlooking something
http://www.metronet.com/~tye/ (scripts, links, nothing fancy)
------------------------------
Date: 12 Jul 98 21:33:47 GMT (Last modified)
From: Perl-Request@ruby.oce.orst.edu (Perl-Users-Digest Admin)
Subject: Special: Digest Administrivia (Last modified: 12 Mar 98)
Message-Id: <null>
Administrivia:
Special notice: in a few days, the new group comp.lang.perl.moderated
should be formed. I would rather not support two different groups, and I
know of no other plans to create a digested moderated group. This leaves
me with two options: 1) keep on with this group 2) change to the
moderated one.
If you have opinions on this, send them to
perl-users-request@ruby.oce.orst.edu.
The Perl-Users Digest is a retransmission of the USENET newsgroup
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the single line:
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To submit articles to comp.lang.perl.misc (and this Digest), send your
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To request back copies (available for a week or so), send your request
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The Meta-FAQ, an article containing information about the FAQ, is
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perl-users FAQ". Due to their sizes, neither the Meta-FAQ nor the FAQ
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The "mini-FAQ", which is an updated version of the Meta-FAQ, is
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For other requests pertaining to the digest, send mail to
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answer them even if I did know the answer.
------------------------------
End of Perl-Users Digest V8 Issue 4209
**************************************
